PH01002685G0120's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT2G28350 : 5.80E-78
Blast annotation: auxin response factor 10
2.Location
Scaffold: PH01002685
Strand: +
| Region | Start | End |
| gene | 67929 | 74451 |
| mRNA | 67929 | 74451 |
| exon | 67929 | 70830 |
| exon | 71063 | 71219 |
| exon | 71346 | 72310 |
| exon | 72421 | 74451 |
| CDS | 70205 | 70830 |
| CDS | 71063 | 71219 |
| CDS | 71346 | 72310 |
| CDS | 72421 | 72490 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | phe-miR160b | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 105 | 206 |
| PF06507.12 | Auxin_resp | 205 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.