PH01002685G0190's details annotation
1.Annotation
ICBR annotation: exosome complex exonuclease rrp4, putative, expressed
Blast result AT1G03360 : 6.70E-25
Blast annotation: ribosomal RNA processing 4
2.Location
Scaffold: PH01002685
Strand: -
| Region | Start | End |
| gene | 128219 | 130638 |
| mRNA | 128219 | 130638 |
| exon | 128219 | 128472 |
| exon | 128527 | 128630 |
| exon | 129644 | 129915 |
| exon | 130033 | 130638 |
| CDS | 128314 | 128472 |
| CDS | 128527 | 128630 |
| CDS | 129644 | 129915 |
| CDS | 130033 | 130187 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | exosome complex component RRP4 | ko03018 | K03679 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000178 | exosome (RNase complex) |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.