PH01002685G0300's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G77360 : 1.00E-39
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01002685
Strand: +
| Region | Start | End |
| gene | 197657 | 199591 |
| mRNA | 197657 | 199591 |
| exon | 197657 | 199591 |
| CDS | 198050 | 199438 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000138 | RLK-Pelle_LRR-Xa (from iTAK) GRAS Transcription_Regulator(from PlantTFDB) vesicle docking involved in exocytosis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 114 | 162 |
| PF01535.19 | PPR | 225 | 253 |
| PF13041.5 | PPR_2 | 291 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.