PH01002687G0220's details annotation
1.Annotation
ICBR annotation: histone acetyltransferase HAC1, putative, expressed
Blast result AT1G79000 : 0.00E+00
Blast annotation: histone acetyltransferase of the CBP family 1
2.Location
Scaffold: PH01002687
Strand: +
| Region | Start | End |
| gene | 145763 | 155517 |
| mRNA | 145763 | 155517 |
| exon | 145763 | 146293 |
| exon | 146718 | 146823 |
| exon | 146951 | 147107 |
| exon | 147588 | 148088 |
| exon | 148998 | 150781 |
| exon | 151309 | 151605 |
| exon | 151695 | 151973 |
| exon | 153408 | 153536 |
| exon | 153626 | 153826 |
| exon | 153986 | 154128 |
| exon | 154211 | 154523 |
| exon | 154689 | 155517 |
| CDS | 146139 | 146293 |
| CDS | 146718 | 146823 |
| CDS | 146951 | 147107 |
| CDS | 147588 | 148088 |
| CDS | 148998 | 150781 |
| CDS | 151309 | 151605 |
| CDS | 151695 | 151973 |
| CDS | 153408 | 153536 |
| CDS | 153626 | 153826 |
| CDS | 153986 | 154128 |
| CDS | 154211 | 154523 |
| CDS | 154689 | 154919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TAZ |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02135.15 | zf-TAZ | 617 | 684 |
| PF08214.10 | HAT_KAT11 | 1094 | 1326 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003712 | transcription cofactor activity |
| GO:0004402 | histone acetyltransferase activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.