PH01002687G0240's details annotation
1.Annotation
ICBR annotation: histone acetyltransferase HAC1, putative, expressed
Blast result AT1G79000 : 3.00E-151
Blast annotation: histone acetyltransferase of the CBP family 1
2.Location
Scaffold: PH01002687
Strand: +
| Region | Start | End |
| gene | 158799 | 162851 |
| mRNA | 158799 | 162851 |
| exon | 158799 | 159151 |
| exon | 159621 | 159708 |
| exon | 159940 | 160079 |
| exon | 160433 | 160511 |
| exon | 160595 | 160984 |
| exon | 161622 | 161839 |
| exon | 161944 | 162851 |
| CDS | 159045 | 159151 |
| CDS | 159621 | 159708 |
| CDS | 159940 | 160079 |
| CDS | 160433 | 160511 |
| CDS | 160595 | 160984 |
| CDS | 161622 | 161839 |
| CDS | 161944 | 162055 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001535 | TAZ Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, Oxidative_phosphorylation peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001834 | phosphopyruvate hydratase complex, TAZ Transcription_Regulator(from iTAK) L-malate dehydrogenase activity, transcription cofactor activity, malate dehydrogenase activity, phosphopyruvate hydratase activity, histone acetyltransferase activity, malate metabolic process, cellular carbohydrate metabolic process, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TAZ |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00569.16 | ZZ | 203 | 244 |
| PF02135.15 | zf-TAZ | 270 | 340 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003712 | transcription cofactor activity |
| GO:0004402 | histone acetyltransferase activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.