PH01002688G0210's details annotation
1.Annotation
ICBR annotation: SGR2, putative, expressed
Blast result AT1G31480 : 3.90E-91
Blast annotation: shoot gravitropism 2 (SGR2)
2.Location
Scaffold: PH01002688
Strand: +
| Region | Start | End |
| gene | 144206 | 148611 |
| mRNA | 144206 | 148611 |
| exon | 144206 | 145380 |
| exon | 145506 | 145571 |
| exon | 145673 | 146197 |
| exon | 146425 | 146509 |
| exon | 146611 | 146723 |
| exon | 146806 | 146878 |
| exon | 147507 | 147609 |
| exon | 147835 | 147928 |
| exon | 148035 | 148097 |
| exon | 148287 | 148335 |
| exon | 148420 | 148611 |
| CDS | 145330 | 145380 |
| CDS | 145506 | 145571 |
| CDS | 145673 | 146197 |
| CDS | 146425 | 146509 |
| CDS | 146611 | 146723 |
| CDS | 146806 | 146878 |
| CDS | 147507 | 147609 |
| CDS | 147835 | 147928 |
| CDS | 148035 | 148097 |
| CDS | 148287 | 148335 |
| CDS | 148420 | 148529 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000814 | DDT Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02862.16 | DDHD | 277 | 419 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.