Annotation of co-expression genes

PH01002698G0190's details annotation

1.Annotation

ICBR annotation: transcriptional adaptor, putative, expressed

Blast result AT4G16420 : 2.00E-141
Blast annotation: homolog of yeast ADA2 2B

2.Location

Scaffold: PH01002698
Strand: +

RegionStartEnd
gene120969130698
mRNA120969130698
exon120969121719
exon121799122042
exon122713122778
exon122853122978
exon123109123184
exon125776125880
exon126100126165
exon127087127309
exon127454127664
exon129004129309
exon129446130698
CDS121667121719
CDS121799122042
CDS122713122778
CDS122853122978
CDS123109123184
CDS125776125880
CDS126100126165
CDS127087127309
CDS127454127664
CDS129004129309
CDS129446129652

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001464MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA processing,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00569.16ZZ4990
PF00249.30Myb_DNA-binding110151

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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