PH01002699G0040's details annotation
1.Annotation
ICBR annotation: early-responsive to dehydration protein-related, putative, expressed
Blast result AT1G32090 : 0.00E+00
Blast annotation: early-responsive to dehydration stress protein (ERD4)
2.Location
Scaffold: PH01002699
Strand: +
| Region | Start | End |
| gene | 29189 | 39123 |
| mRNA | 29189 | 39123 |
| exon | 29189 | 30580 |
| exon | 32323 | 32475 |
| exon | 32682 | 32817 |
| exon | 33033 | 33134 |
| exon | 33290 | 33409 |
| exon | 33538 | 33618 |
| exon | 33756 | 34096 |
| exon | 34212 | 34457 |
| exon | 34681 | 35005 |
| exon | 35127 | 35360 |
| exon | 35469 | 35648 |
| exon | 37448 | 38020 |
| exon | 38066 | 39123 |
| CDS | 30264 | 30580 |
| CDS | 32323 | 32475 |
| CDS | 32682 | 32817 |
| CDS | 33033 | 33134 |
| CDS | 33290 | 33409 |
| CDS | 33538 | 33618 |
| CDS | 33756 | 34096 |
| CDS | 34212 | 34457 |
| CDS | 34681 | 35005 |
| CDS | 35127 | 35360 |
| CDS | 35469 | 35648 |
| CDS | 37448 | 38020 |
| CDS | 38066 | 38362 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13967.5 | RSN1_TM | 7 | 179 |
| PF14703.5 | PHM7_cyt | 200 | 362 |
| PF02714.14 | RSN1_7TM | 373 | 645 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.