PH01002699G0110's details annotation
1.Annotation
ICBR annotation: proteasome subunit, putative, expressed
Blast result AT4G19006 : 4.00E-167
Blast annotation: Proteasome component (PCI) domain protein
2.Location
Scaffold: PH01002699
Strand: +
| Region | Start | End |
| gene | 69738 | 75965 |
| mRNA | 69738 | 75965 |
| exon | 69738 | 71311 |
| exon | 72391 | 72837 |
| exon | 72966 | 73046 |
| exon | 73842 | 74038 |
| exon | 74133 | 74232 |
| exon | 75003 | 75965 |
| CDS | 71165 | 71311 |
| CDS | 72391 | 72837 |
| CDS | 72966 | 73046 |
| CDS | 73842 | 74038 |
| CDS | 74133 | 74232 |
| CDS | 75003 | 75188 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01399.26 | PCI | 236 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 26S proteasome regulatory subunit N9 | ko03051 | K03039 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.