PH01002699G0190's details annotation
1.Annotation
ICBR annotation: RCD1, putative, expressed
Blast result AT1G32230 : 1.60E-71
Blast annotation: WWE protein-protein interaction domain protein family
2.Location
Scaffold: PH01002699
Strand: +
| Region | Start | End |
| gene | 131332 | 135239 |
| mRNA | 131332 | 135239 |
| exon | 131332 | 132489 |
| exon | 132762 | 133003 |
| exon | 133078 | 133205 |
| exon | 133500 | 133682 |
| exon | 133786 | 133881 |
| exon | 134072 | 135239 |
| CDS | 131378 | 132489 |
| CDS | 132762 | 133003 |
| CDS | 133078 | 133205 |
| CDS | 133500 | 133682 |
| CDS | 133786 | 133881 |
| CDS | 134072 | 134134 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001057 | RLK-Pelle_URK-1 (from iTAK) NEK (from iTAK) chromatin silencing at telomere, chromatin modification, histone acetylation, |
| coexpression network | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport, |
| coexpression network | CFinderM001831 | |
| coexpression network | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12174.7 | RST | 521 | 585 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003950 | NAD+ ADP-ribosyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.