Annotation of co-expression genes

PH01002699G0210's details annotation

1.Annotation

ICBR annotation: jmjC domain containing protein, expressed

Blast result AT5G46910 : 1.00E-149
Blast annotation: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

2.Location

Scaffold: PH01002699
Strand: -

RegionStartEnd
gene143855165073
mRNA143855165073
exon143855145130
exon145519145782
exon145862146221
exon146279146352
exon146767147044
exon147134147213
exon147299147352
exon147428147647
exon147726147882
exon147993165073
CDS144723145130
CDS145519145782
CDS145862146221
CDS146279146352
CDS146767147044
CDS147134147213
CDS147299147352
CDS147428147647
CDS147726147882
CDS147993148419

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001435Jumonji Transcription_Regulator(from iTAK)
PHD Transcription_Regulator(from iTAK)
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Jumonji

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02375.16JmjN116148
PF02373.21JmjC292408

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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