PH01002702G0180's details annotation
1.Annotation
ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed
Blast result AT3G52200 : 5.40E-92
Blast annotation: Dihydrolipoamide acetyltransferase, long form protein
2.Location
Scaffold: PH01002702
Strand: +
| Region | Start | End |
| gene | 130004 | 145585 |
| mRNA | 130004 | 145585 |
| exon | 130004 | 130470 |
| exon | 130582 | 130635 |
| exon | 131297 | 131333 |
| exon | 131397 | 131430 |
| exon | 132156 | 132205 |
| exon | 132473 | 132546 |
| exon | 135003 | 135433 |
| exon | 135738 | 135879 |
| exon | 136152 | 136617 |
| exon | 137644 | 138033 |
| exon | 138693 | 138733 |
| exon | 139282 | 139351 |
| exon | 139510 | 139963 |
| exon | 141153 | 141244 |
| exon | 141364 | 141424 |
| exon | 141502 | 141546 |
| exon | 141640 | 141723 |
| exon | 142370 | 142446 |
| exon | 142893 | 142969 |
| exon | 143559 | 143619 |
| exon | 143704 | 143764 |
| exon | 143839 | 143919 |
| exon | 144508 | 145585 |
| CDS | 130442 | 130470 |
| CDS | 130582 | 130635 |
| CDS | 131297 | 131333 |
| CDS | 131397 | 131430 |
| CDS | 132156 | 132205 |
| CDS | 132473 | 132546 |
| CDS | 135003 | 135433 |
| CDS | 135738 | 135879 |
| CDS | 136152 | 136617 |
| CDS | 137644 | 138033 |
| CDS | 138693 | 138733 |
| CDS | 139282 | 139351 |
| CDS | 139510 | 139963 |
| CDS | 141153 | 141244 |
| CDS | 141364 | 141424 |
| CDS | 141502 | 141546 |
| CDS | 141640 | 141723 |
| CDS | 142370 | 142446 |
| CDS | 142893 | 142969 |
| CDS | 143559 | 143619 |
| CDS | 143704 | 143764 |
| CDS | 143839 | 143919 |
| CDS | 144508 | 144521 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001759 | Citrate_cycle_(TCA_cycle) tricarboxylic acid cycle enzyme complex, phenylalanyl-tRNA aminoacylation, fumarate metabolic process, tricarboxylic acid cycle, tRNA aminoacylation, phenylalanine-tRNA ligase activity, fumarate hydratase activity, tRNA binding, Carbon_fixation_pathways_in_prokaryotes Aminoacyl-tRNA_biosynthesis Pyruvate_metabolism Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001760 | Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase complex, transferase activity, transferring acyl groups, protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, dihydrolipoyllysine-residue succinyltransferase activity, tricarboxylic acid cycle, electron transport chain, cellular protein modification process, Lysine_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08284.10 | RVP_2 | 130 | 215 |
| PF02817.16 | E3_binding | 650 | 685 |
| PF00198.22 | 2-oxoacid_dh | 788 | 877 |
| PF00198.22 | 2-oxoacid_dh | 903 | 970 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00010 | K00627 |
| Citrate cycle (TCA cycle) | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00020 | K00627 |
| Pyruvate metabolism | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00620 | K00627 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016746 | transferase activity, transferring acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.