PH01002704G0080's details annotation
1.Annotation
ICBR annotation: dynein light chain type 1 domain containing protein, expressed
Blast result AT1G52240 : 1.00E-17
Blast annotation: RHO guanyl-nucleotide exchange factor 11
2.Location
Scaffold: PH01002704
Strand: +
| Region | Start | End |
| gene | 37211 | 40338 |
| mRNA | 37211 | 40338 |
| exon | 37211 | 37745 |
| exon | 38255 | 38403 |
| exon | 38803 | 38863 |
| exon | 39001 | 39039 |
| exon | 39726 | 40338 |
| CDS | 37566 | 37745 |
| CDS | 38255 | 38403 |
| CDS | 38803 | 38863 |
| CDS | 39001 | 39039 |
| CDS | 39726 | 39869 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01221.17 | Dynein_light | 144 | 186 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005875 | microtubule associated complex |
| GO:0007017 | microtubule-based process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.