Annotation of co-expression genes

PH01002711G0020's details annotation

1.Annotation

ICBR annotation: adaptin, putative, expressed

Blast result AT3G55480 : 0.00E+00
Blast annotation: protein affected trafficking 2

2.Location

Scaffold: PH01002711
Strand: -

RegionStartEnd
gene1194423867
mRNA1194423867
exon1194412904
exon1335113599
exon1374014746
exon1481615016
exon1803118140
exon1822118347
exon1879018963
exon1943020062
exon2015020396
exon2293023006
exon2314423867
CDS1255912904
CDS1335113599
CDS1374014746
CDS1481615016
CDS1803118140
CDS1822118347
CDS1879018963
CDS1943020062
CDS2015020396
CDS2293023006
CDS2314423296

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01602.19Adaptin_N18617
PF14796.5AP3B1_C810904

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0030117membrane coat
GO:0030123AP-3 adaptor complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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