PH01002711G0240's details annotation
1.Annotation
ICBR annotation: pumilio-family RNA binding protein, putative, expressed
Blast result AT2G29140 : 0
Blast annotation: pumilio 3
2.Location
Scaffold: PH01002711
Strand: +
| Region | Start | End |
| gene | 162596 | 171678 |
| mRNA | 162596 | 171678 |
| exon | 162596 | 164362 |
| exon | 164834 | 164895 |
| exon | 165569 | 166794 |
| exon | 167010 | 167151 |
| exon | 167227 | 167334 |
| exon | 167905 | 168117 |
| exon | 168253 | 168327 |
| exon | 169043 | 169153 |
| exon | 169254 | 169351 |
| exon | 169921 | 170179 |
| exon | 170355 | 170529 |
| exon | 171488 | 171678 |
| CDS | 163954 | 164362 |
| CDS | 164834 | 164895 |
| CDS | 165569 | 166794 |
| CDS | 167010 | 167151 |
| CDS | 167227 | 167334 |
| CDS | 167905 | 168117 |
| CDS | 168253 | 168327 |
| CDS | 169043 | 169153 |
| CDS | 169254 | 169351 |
| CDS | 169921 | 170179 |
| CDS | 170355 | 170529 |
| CDS | 171488 | 171555 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001187 | glycogen biosynthetic process, 'de novo' IMP biosynthetic process, 5-(carboxyamino)imidazole_ribonucleotide_mutase_activity |
| coexpression network | CFinderM001556 | RNA_transport bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07990.11 | NABP | 239 | 351 |
| PF07990.11 | NABP | 336 | 556 |
| PF00806.18 | PUF | 558 | 591 |
| PF00806.18 | PUF | 596 | 626 |
| PF00806.18 | PUF | 630 | 659 |
| PF00806.18 | PUF | 668 | 698 |
| PF00806.18 | PUF | 727 | 760 |
| PF00806.18 | PUF | 853 | 885 |
| PF00806.18 | PUF | 897 | 929 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.