Annotation of co-expression genes

PH01002711G0300's details annotation

1.Annotation

ICBR annotation: glycerol-3-phosphate dehydrogenase, putative, expressed

Blast result AT5G40610 : 1.00E-118
Blast annotation: NAD-dependent glycerol-3-phosphate dehydrogenase family protein

2.Location

Scaffold: PH01002711
Strand: +

RegionStartEnd
gene195948201883
mRNA195948201883
exon195948196204
exon196744196820
exon196925196997
exon197345197466
exon197646197753
exon198017198080
exon198174198211
exon198303198423
exon198496198550
exon198736198784
exon200529201059
exon201318201883
CDS196093196204
CDS196744196820
CDS196925196997
CDS197345197466
CDS197646197753
CDS198017198080
CDS198174198211
CDS198303198423
CDS198496198550
CDS198736198784
CDS200529201059
CDS201318201836

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000807E2F/DP Transcription_Regulator(from PlantTFDB)
E2F-DP Transcription_Regulator(from iTAK)
transcription factor complex,
glycerol-3-phosphate dehydrogenase complex,
Glycerophospholipid_metabolism
glycerol-3-phosphate catabolic process,
glycerol-3-phosphate metabolic process,
glycerol-3-phosphate dehydrogenase [NAD+] activity,
coexpression networkCFinderM000869Glycerophospholipid_metabolism
glycerol-3-phosphate metabolic process,
glycerol-3-phosphate catabolic process,
glycerol-3-phosphate dehydrogenase complex,
protein methylation,
glycerol-3-phosphate dehydrogenase [NAD+] activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01210.22NAD_Gly3P_dh_N10133
PF07479.13NAD_Gly3P_dh_C167273

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismglycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8]ko00564K00006

10.Gene Ontology

GO AccessionGO Annotation
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0005737cytoplasm
GO:0005975carbohydrate metabolic process
GO:0006072glycerol-3-phosphate metabolic process
GO:0009331glycerol-3-phosphate dehydrogenase complex
GO:0016491oxidoreductase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046168glycerol-3-phosphate catabolic process
GO:0050662coenzyme binding
GO:0051287NAD binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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