PH01002714G0180's details annotation
1.Annotation
ICBR annotation: myosin, putative, expressed
Blast result AT5G20490 : 0
Blast annotation: Myosin family protein with Dil domain
2.Location
Scaffold: PH01002714
Strand: +
| Region | Start | End |
| gene | 119912 | 132551 |
| mRNA | 119912 | 132551 |
| exon | 119912 | 120192 |
| exon | 120262 | 120371 |
| exon | 120490 | 120550 |
| exon | 121126 | 121303 |
| exon | 121479 | 121684 |
| exon | 121867 | 121986 |
| exon | 122087 | 122185 |
| exon | 122278 | 122499 |
| exon | 122940 | 123079 |
| exon | 123237 | 123351 |
| exon | 123442 | 123495 |
| exon | 123594 | 123674 |
| exon | 123807 | 123977 |
| exon | 124753 | 124893 |
| exon | 124975 | 125045 |
| exon | 125158 | 125224 |
| exon | 125426 | 125482 |
| exon | 125560 | 125640 |
| exon | 125768 | 125815 |
| exon | 125952 | 126000 |
| exon | 128231 | 128469 |
| exon | 128814 | 128999 |
| exon | 129160 | 129299 |
| exon | 129406 | 129523 |
| exon | 129593 | 129667 |
| exon | 129750 | 129806 |
| exon | 129916 | 130077 |
| exon | 130159 | 130302 |
| exon | 130402 | 130605 |
| exon | 131225 | 131338 |
| exon | 131427 | 131507 |
| exon | 131589 | 131683 |
| exon | 131775 | 132551 |
| CDS | 120016 | 120192 |
| CDS | 120262 | 120371 |
| CDS | 120490 | 120550 |
| CDS | 121126 | 121303 |
| CDS | 121479 | 121684 |
| CDS | 121867 | 121986 |
| CDS | 122087 | 122185 |
| CDS | 122278 | 122499 |
| CDS | 122940 | 123079 |
| CDS | 123237 | 123351 |
| CDS | 123442 | 123495 |
| CDS | 123594 | 123674 |
| CDS | 123807 | 123977 |
| CDS | 124753 | 124893 |
| CDS | 124975 | 125045 |
| CDS | 125158 | 125224 |
| CDS | 125426 | 125482 |
| CDS | 125560 | 125640 |
| CDS | 125768 | 125815 |
| CDS | 125952 | 126000 |
| CDS | 128231 | 128469 |
| CDS | 128814 | 128999 |
| CDS | 129160 | 129299 |
| CDS | 129406 | 129523 |
| CDS | 129593 | 129667 |
| CDS | 129750 | 129806 |
| CDS | 129916 | 130077 |
| CDS | 130159 | 130302 |
| CDS | 130402 | 130605 |
| CDS | 131225 | 131338 |
| CDS | 131427 | 131507 |
| CDS | 131589 | 131683 |
| CDS | 131775 | 131886 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00063.20 | Myosin_head | 16 | 125 |
| PF00612.26 | IQ | 164 | 183 |
| PF00612.26 | IQ | 190 | 205 |
| PF00612.26 | IQ | 213 | 232 |
| PF00612.26 | IQ | 237 | 257 |
| PF01843.18 | DIL | 1196 | 1245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003774 | motor activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0016459 | myosin complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.