PH01002725G0150's details annotation
1.Annotation
ICBR annotation: SET domain containing protein, expressed
Blast result AT4G15180 : 0.00E+00
Blast annotation: SET domain protein 2
2.Location
Scaffold: PH01002725
Strand: -
| Region | Start | End |
| gene | 101598 | 114443 |
| mRNA | 101598 | 114443 |
| exon | 101598 | 101802 |
| exon | 102168 | 102290 |
| exon | 103290 | 103589 |
| exon | 103679 | 103787 |
| exon | 103872 | 104119 |
| exon | 104223 | 104276 |
| exon | 104355 | 104480 |
| exon | 104572 | 104739 |
| exon | 104877 | 104972 |
| exon | 105059 | 105158 |
| exon | 105732 | 105832 |
| exon | 105939 | 106049 |
| exon | 106144 | 106215 |
| exon | 106464 | 106526 |
| exon | 106619 | 107435 |
| exon | 107525 | 107625 |
| exon | 107724 | 108269 |
| exon | 108356 | 108726 |
| exon | 109147 | 110178 |
| exon | 110512 | 110568 |
| exon | 111223 | 114443 |
| CDS | 101728 | 101802 |
| CDS | 102168 | 102290 |
| CDS | 103290 | 103589 |
| CDS | 103679 | 103787 |
| CDS | 103872 | 104119 |
| CDS | 104223 | 104276 |
| CDS | 104355 | 104480 |
| CDS | 104572 | 104739 |
| CDS | 104877 | 104972 |
| CDS | 105059 | 105158 |
| CDS | 105732 | 105832 |
| CDS | 105939 | 106049 |
| CDS | 106144 | 106215 |
| CDS | 106464 | 106526 |
| CDS | 106619 | 107435 |
| CDS | 107525 | 107625 |
| CDS | 107724 | 108269 |
| CDS | 108356 | 108726 |
| CDS | 109147 | 110178 |
| CDS | 110512 | 110568 |
| CDS | 111223 | 112993 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000149 | SET Transcription_Regulator(from iTAK) DDT Transcription_Regulator(from iTAK) GTnc GlycosylTransferases mitochondrial inner membrane, exocyst, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 1655 | 1710 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.