PH01002725G0180's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G54540 : 4.80E-22
Blast annotation: Uncharacterised conserved protein (UCP012943)
2.Location
Scaffold: PH01002725
Strand: -
| Region | Start | End |
| gene | 133284 | 137744 |
| mRNA | 133284 | 137744 |
| exon | 133284 | 133746 |
| exon | 133876 | 133969 |
| exon | 134457 | 134601 |
| exon | 135494 | 137744 |
| CDS | 133436 | 133746 |
| CDS | 133876 | 133969 |
| CDS | 134457 | 134601 |
| CDS | 135494 | 135843 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000747 | microtubule, protein complex, microtubule-based process, protein polymerization, |
| coexpression network | CFinderM000905 | Sulfur_relay_system |
| coexpression network | CFinderM001111 | vacuolar proton-transporting V-type ATPase, V1 domain, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) binding, proton-transporting ATPase activity, rotational mechanism, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001593 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, proton-transporting ATPase activity, rotational mechanism, binding, |
| coexpression network | CFinderM001896 | seryl-tRNA aminoacylation, serine-tRNA ligase activity, 5S rRNA binding, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.