PH01002727G0080's details annotation
1.Annotation
ICBR annotation: CCT/B-box zinc finger protein, putative, expressed
Blast result AT5G57660 : 1.30E-39
Blast annotation: CONSTANS-like 5
2.Location
Scaffold: PH01002727
Strand: +
| Region | Start | End |
| gene | 85169 | 88164 |
| mRNA | 85169 | 88164 |
| exon | 85169 | 87038 |
| exon | 87124 | 87252 |
| exon | 87349 | 88164 |
| CDS | 86424 | 87038 |
| CDS | 87124 | 87252 |
| CDS | 87349 | 87654 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000750 | CO-like Transcription_Regulator(from PlantTFDB) C2C2-CO-like Transcription_Regulator(from iTAK) zinc ion binding, intracellular, Others Transcription_Regulator(from iTAK) actin binding, protein binding, |
| coexpression network | CFinderM001191 | CO-like Transcription_Regulator(from PlantTFDB) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
| Transcription_Regulator(from PlantTFDB) | CO-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06203.13 | CCT | 222 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.