PH01002728G0020's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase, putative, expressed
Blast result AT4G19810 : 5.60E-45
Blast annotation: Glycosyl hydrolase family protein with chitinase insertion domain
2.Location
Scaffold: PH01002728
Strand: -
| Region | Start | End |
| gene | 25094 | 28980 |
| mRNA | 25094 | 28980 |
| exon | 25094 | 26769 |
| exon | 26844 | 27200 |
| exon | 27332 | 28980 |
| CDS | 25906 | 26769 |
| CDS | 26844 | 27200 |
| CDS | 27332 | 27445 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00704.27 | Glyco_hydro_18 | 48 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004568 | chitinase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006032 | chitin catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.