PH01002739G0180's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result AT5G42790 : 1.00E-103
Blast annotation: proteasome alpha subunit F1
2.Location
Scaffold: PH01002739
Strand: +
| Region | Start | End |
| gene | 114159 | 121420 |
| mRNA | 114159 | 121420 |
| exon | 114159 | 115467 |
| exon | 117021 | 117609 |
| exon | 120141 | 121420 |
| CDS | 115208 | 115467 |
| CDS | 117021 | 117609 |
| CDS | 120141 | 120593 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10584.8 | Proteasome_A_N | 172 | 194 |
| PF00227.25 | Proteasome | 195 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 20S proteasome subunit alpha 6 [EC:3.4.25.1] | ko03051 | K02725 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004175 | endopeptidase activity |
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0005839 | proteasome core complex |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
| GO:0019773 | proteasome core complex, alpha-subunit complex |
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.