PH01002743G0050's details annotation
1.Annotation
ICBR annotation: OsMADS18 - MADS-box family gene with MIKCc type-box, expressed
Blast result AT1G69120 : 2.40E-37
Blast annotation: K-box region and MADS-box transcription factor family protein
2.Location
Scaffold: PH01002743
Strand: -
| Region | Start | End |
| gene | 29316 | 34449 |
| mRNA | 29316 | 34449 |
| exon | 29316 | 29379 |
| exon | 29437 | 29501 |
| exon | 29615 | 29696 |
| exon | 31375 | 34449 |
| CDS | 29340 | 29379 |
| CDS | 29437 | 29501 |
| CDS | 29615 | 29696 |
| CDS | 31375 | 31559 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MADS-M-type |
| Transcription_Regulator(from PlantTFDB) | M-type_MADS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00319.17 | SRF-TF | 10 | 57 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.