PH01002753G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G37080 : 4.50E-97
Blast annotation: Protein of unknown function, DUF547
2.Location
Scaffold: PH01002753
Strand: -
| Region | Start | End |
| gene | 143992 | 150518 |
| mRNA | 143992 | 150518 |
| exon | 143992 | 144360 |
| exon | 144484 | 144603 |
| exon | 144693 | 144776 |
| exon | 144887 | 144946 |
| exon | 147834 | 147933 |
| exon | 148070 | 148434 |
| exon | 148528 | 150518 |
| CDS | 144055 | 144360 |
| CDS | 144484 | 144603 |
| CDS | 144693 | 144776 |
| CDS | 144887 | 144946 |
| CDS | 147834 | 147933 |
| CDS | 148070 | 148434 |
| CDS | 148528 | 149004 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14389.5 | Lzipper-MIP1 | 9 | 42 |
| PF04784.13 | DUF547 | 294 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.