PH01002755G0130's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G25670 : 5.10E-22
Blast annotation: -
2.Location
Scaffold: PH01002755
Strand: -
| Region | Start | End |
| gene | 73208 | 74710 |
| mRNA | 73208 | 74710 |
| exon | 73208 | 74710 |
| CDS | 73214 | 73885 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000133 | C2H2 Transcription_Regulator(from PlantTFDB) RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) carbohydrate phosphorylation, |
| coexpression network | CFinderM000998 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lysine_degradation HB-other Transcription_Regulator(from PlantTFDB) histone_methylation histone_lysine_methylation aromatic amino acid family biosynthetic process, SET Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, |
| coexpression network | CFinderM001612 | Lysine_degradation nucleus, HB-other Transcription_Regulator(from PlantTFDB) histone_lysine_methylation regulation_of_cell_cycle histone_methylation SET Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity |
| coexpression network | CFinderM001693 | translation, Ribosome structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.