PH01002763G0330's details annotation
1.Annotation
ICBR annotation: RWP-RK domain-containing protein, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002763
Strand: -
| Region | Start | End |
| gene | 178236 | 184366 |
| mRNA | 178236 | 184366 |
| exon | 178236 | 178833 |
| exon | 179092 | 179587 |
| exon | 179853 | 179926 |
| exon | 183300 | 183367 |
| exon | 183509 | 184366 |
| CDS | 178672 | 178833 |
| CDS | 179092 | 179587 |
| CDS | 179853 | 179926 |
| CDS | 183300 | 183367 |
| CDS | 183509 | 183656 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000636 | RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) GT31 GlycosylTransferases clathrin coat of coated pit, clathrin adaptor complex, ATP biosynthetic process, ATP_catabolic_process integral to membrane, |
| coexpression network | CFinderM001355 | STE_STE20-YSK (from iTAK) binding, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) endoplasmic reticulum membrane, membrane coat, regulation of ARF protein signal transduction, GPI anchor biosynthetic process, microtubule associated complex, ARF guanyl-nucleotide exchange factor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | RWP-RK |
| Transcription_Regulator(from PlantTFDB) | Nin-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02042.14 | RWP-RK | 29 | 72 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.