PH01002772G0260's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G14030 : 2.60E-41
Blast annotation: selenium-binding protein 1
2.Location
Scaffold: PH01002772
Strand: -
| Region | Start | End |
| gene | 176398 | 180446 |
| mRNA | 176398 | 180446 |
| exon | 176398 | 176504 |
| exon | 177050 | 177095 |
| exon | 177178 | 177409 |
| exon | 177775 | 177867 |
| exon | 178080 | 178143 |
| exon | 178225 | 178543 |
| exon | 179976 | 180114 |
| exon | 180322 | 180446 |
| CDS | 176428 | 176504 |
| CDS | 177050 | 177095 |
| CDS | 177178 | 177409 |
| CDS | 177775 | 177867 |
| CDS | 178080 | 178143 |
| CDS | 178225 | 178543 |
| CDS | 179976 | 180114 |
| CDS | 180322 | 180326 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05694.10 | SBP56 | 207 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008430 | selenium binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.