Gene details

Annotation of co-expression genes

PH01002779G0040's details annotation

1.Annotation

ICBR annotation: indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

Blast result AT4G02610 : 5.00E-106
Blast annotation: Aldolase-type TIM barrel family protein

2.Location

Scaffold: PH01002779
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	null	null

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00290.19	Trp_syntA	45	292

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
314 Glycine, serine and threonine metabolism	tryptophan synthase alpha chain [EC:4.2.1.20]		K01695
428 Phenylalanine, tyrosine and tryptophan biosynthesis	tryptophan synthase alpha chain [EC:4.2.1.20]		K01695

10.Gene Ontology

GO Accession	GO Annotation
GO:0003824	catalytic activity
GO:0004834	tryptophan synthase activity
GO:0006568	tryptophan metabolic process
GO:0008152	metabolic process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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