PH01002789G0220's details annotation
1.Annotation
ICBR annotation: ThiF family domain containing protein, putative, expressed
Blast result AT4G24940 : 8.00E-114
Blast annotation: SUMO-activating enzyme 1A
2.Location
Scaffold: PH01002789
Strand: +
| Region | Start | End |
| gene | 158679 | 165846 |
| mRNA | 158679 | 165846 |
| exon | 158679 | 158970 |
| exon | 159372 | 159423 |
| exon | 159950 | 160145 |
| exon | 160523 | 160602 |
| exon | 160756 | 160872 |
| exon | 161752 | 161805 |
| exon | 162619 | 162685 |
| exon | 162881 | 162984 |
| exon | 163058 | 163165 |
| exon | 165568 | 165846 |
| CDS | 158867 | 158970 |
| CDS | 159372 | 159423 |
| CDS | 159950 | 160145 |
| CDS | 160523 | 160602 |
| CDS | 160756 | 160872 |
| CDS | 161752 | 161805 |
| CDS | 162619 | 162685 |
| CDS | 162881 | 162984 |
| CDS | 163058 | 163165 |
| CDS | 165568 | 165681 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00899.20 | ThiF | 21 | 315 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-like 1-activating enzyme E1 A [EC:6.3.2.19] | ko04120 | K10684 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.