PH01002791G0200's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family protein 27, putative, expressed
Blast result AT3G26380 : 7.00E-152
Blast annotation: Melibiase family protein
2.Location
Scaffold: PH01002791
Strand: +
| Region | Start | End |
| gene | 138994 | 146086 |
| mRNA | 138994 | 146086 |
| exon | 138994 | 139377 |
| exon | 141222 | 141369 |
| exon | 141474 | 141731 |
| exon | 142234 | 142314 |
| exon | 142679 | 142853 |
| exon | 143170 | 143231 |
| exon | 143318 | 143481 |
| exon | 143514 | 143568 |
| exon | 144114 | 144194 |
| exon | 144274 | 144408 |
| exon | 144487 | 144740 |
| exon | 144815 | 144974 |
| exon | 145767 | 145848 |
| exon | 146071 | 146086 |
| CDS | 139109 | 139377 |
| CDS | 141222 | 141369 |
| CDS | 141474 | 141731 |
| CDS | 142234 | 142314 |
| CDS | 142679 | 142853 |
| CDS | 143170 | 143231 |
| CDS | 143318 | 143481 |
| CDS | 143514 | 143568 |
| CDS | 144114 | 144194 |
| CDS | 144274 | 144408 |
| CDS | 144487 | 144740 |
| CDS | 144815 | 144974 |
| CDS | 145767 | 145848 |
| CDS | 146071 | 146084 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16499.4 | Melibiase_2 | 300 | 468 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.