PH01002807G0140's details annotation
1.Annotation
ICBR annotation: zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Blast result AT5G56930 : 3.70E-39
Blast annotation: CCCH-type zinc finger family protein
2.Location
Scaffold: PH01002807
Strand: -
| Region | Start | End |
| gene | 84105 | 89334 |
| mRNA | 84105 | 89334 |
| exon | 84105 | 85803 |
| exon | 85901 | 86041 |
| exon | 86453 | 86503 |
| exon | 86868 | 86996 |
| exon | 87113 | 87175 |
| exon | 87578 | 89334 |
| CDS | 85231 | 85803 |
| CDS | 85901 | 86041 |
| CDS | 86453 | 86503 |
| CDS | 86868 | 86996 |
| CDS | 87113 | 87175 |
| CDS | 87578 | 88720 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001695 | C3H Transcription_Regulator(from PlantTFDB) DNA photolyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00642.23 | zf-CCCH | 488 | 509 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.