PH01002809G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G15830 : 1.30E-38
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01002809
Strand: -
| Region | Start | End |
| gene | 3580 | 5400 |
| mRNA | 3580 | 5400 |
| exon | 3580 | 4120 |
| exon | 4230 | 4424 |
| exon | 4519 | 4663 |
| exon | 4996 | 5400 |
| CDS | 3860 | 4120 |
| CDS | 4230 | 4424 |
| CDS | 4519 | 4663 |
| CDS | 4996 | 5015 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12348.7 | CLASP_N | 8 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.