Annotation of co-expression genes

PH01002809G0260's details annotation

1.Annotation

ICBR annotation: glutathione S-transferase, putative, expressed

Blast result AT2G47730 : 6.70E-52
Blast annotation: glutathione S-transferase phi 8

2.Location

Scaffold: PH01002809
Strand: -

RegionStartEnd
gene143015144350
mRNA143015144350
exon143015143506
exon143819143867
exon144053144350
CDS143061143506
CDS143819143867
CDS144053144202

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001140RB Transcription_Regulator(from iTAK)
nucleus,
regulation_of_cell_cycle
SNF2 Transcription_Regulator(from iTAK)
Drug_metabolism_-_cytochrome_P450
Metabolism_of_xenobiotics_by_cytochrome_P450
Glutathione_metabolism
coexpression networkCFinderM001589PHD Transcription_Regulator(from iTAK)
fructose-bisphosphate aldolase activity,
glycolysis,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02798.19GST_N576
PF00043.24GST_C106200

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismglutathione S-transferase [EC:2.5.1.18]ko00480K00799
Metabolism of xenobiotics by cytochrome P450glutathione S-transferase [EC:2.5.1.18]ko00980K00799
Drug metabolism - cytochrome P450glutathione S-transferase [EC:2.5.1.18]ko00982K00799

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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