PH01002810G0020's details annotation
1.Annotation
ICBR annotation: carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
Blast result AT1G77060 : 3.10E-76
Blast annotation: Phosphoenolpyruvate carboxylase family protein
2.Location
Scaffold: PH01002810
Strand: +
| Region | Start | End |
| gene | 6319 | 12049 |
| mRNA | 6319 | 12049 |
| exon | 6319 | 7268 |
| exon | 7453 | 7526 |
| exon | 8473 | 8582 |
| exon | 8858 | 9020 |
| exon | 10631 | 10713 |
| exon | 11167 | 11313 |
| exon | 11608 | 12049 |
| CDS | 7000 | 7268 |
| CDS | 7453 | 7526 |
| CDS | 8473 | 8582 |
| CDS | 8858 | 9020 |
| CDS | 10631 | 10713 |
| CDS | 11167 | 11313 |
| CDS | 11608 | 11997 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13714.5 | PEP_mutase | 40 | 117 |
| PF13714.5 | PEP_mutase | 206 | 355 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.