Annotation of co-expression genes

PH01002816G0040's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 2, putative, expressed

Blast result AT1G07650 : 0.00E+00
Blast annotation: Leucine-rich repeat transmembrane protein kinase

2.Location

Scaffold: PH01002816
Strand: -

RegionStartEnd
gene3811252611
mRNA3811252611
exon3811238305
exon3913539499
exon3997240026
exon4014340298
exon4049540729
exon4086741077
exon4154041694
exon4278342978
exon4316443544
exon4412444193
exon4435044421
exon4481144882
exon4496145032
exon4598146052
exon4616046231
exon4626846384
exon4646446535
exon4666546833
exon4792148108
exon4936849391
exon4947049618
exon5068350774
exon5107852611
CDS3816438305
CDS3913539499
CDS3997240026
CDS4014340298
CDS4049540729
CDS4086741077
CDS4154041694
CDS4278342978
CDS4316443544
CDS4412444193
CDS4435044421
CDS4481144882
CDS4496145032
CDS4598146052
CDS4616046231
CDS4626846384
CDS4646446535
CDS4666546833
CDS4792148108
CDS4936849391
CDS4947049618
CDS5068350774
CDS5107851186

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00560.32LRR_1265284
PF13855.5LRR_8375434
PF11721.7Malectin456638
PF07714.16Pkinase_Tyr681891

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.