PH01002825G0030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G30480 : 2.80E-13
Blast annotation: -
2.Location
Scaffold: PH01002825
Strand: +
| Region | Start | End |
| gene | 13630 | 21807 |
| mRNA | 13630 | 21807 |
| exon | 13630 | 14942 |
| exon | 15468 | 15575 |
| exon | 15835 | 15847 |
| exon | 15931 | 16064 |
| exon | 16359 | 16454 |
| exon | 16988 | 17042 |
| exon | 17546 | 17630 |
| exon | 17973 | 18174 |
| exon | 18286 | 18442 |
| exon | 18518 | 18555 |
| exon | 19302 | 19383 |
| exon | 19454 | 19558 |
| exon | 19678 | 19703 |
| exon | 19847 | 20996 |
| exon | 21088 | 21197 |
| exon | 21315 | 21466 |
| exon | 21737 | 21807 |
| CDS | 14756 | 14942 |
| CDS | 15468 | 15575 |
| CDS | 15835 | 15847 |
| CDS | 15931 | 16064 |
| CDS | 16359 | 16454 |
| CDS | 16988 | 17042 |
| CDS | 17546 | 17630 |
| CDS | 17973 | 18174 |
| CDS | 18286 | 18442 |
| CDS | 18518 | 18555 |
| CDS | 19302 | 19383 |
| CDS | 19454 | 19558 |
| CDS | 19678 | 19703 |
| CDS | 19847 | 20996 |
| CDS | 21088 | 21197 |
| CDS | 21315 | 21466 |
| CDS | 21737 | 21793 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.