PH01002840G0250's details annotation
1.Annotation
ICBR annotation: OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed
Blast result AT2G47390 : 3.20E-39
Blast annotation: Prolyl oligopeptidase family protein
2.Location
Scaffold: PH01002840
Strand: +
| Region | Start | End |
| gene | 136437 | 142501 |
| mRNA | 136437 | 142501 |
| exon | 136437 | 137981 |
| exon | 138087 | 138120 |
| exon | 138252 | 138401 |
| exon | 139194 | 139320 |
| exon | 139755 | 139970 |
| exon | 140278 | 140351 |
| exon | 140538 | 140605 |
| exon | 140687 | 140816 |
| exon | 141620 | 141743 |
| exon | 141860 | 142501 |
| CDS | 137824 | 137981 |
| CDS | 138087 | 138120 |
| CDS | 138252 | 138401 |
| CDS | 139194 | 139320 |
| CDS | 139755 | 139970 |
| CDS | 140278 | 140351 |
| CDS | 140538 | 140605 |
| CDS | 140687 | 140816 |
| CDS | 141620 | 141743 |
| CDS | 141860 | 141963 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08414.9 | NADPH_Ox | 1 | 45 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004601 | peroxidase activity |
| GO:0050664 | oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.