PH01002850G0020's details annotation
1.Annotation
ICBR annotation: auxin response factor 7, putative, expressed
Blast result AT1G59750 : 7.00E-105
Blast annotation: auxin response factor 1
2.Location
Scaffold: PH01002850
Strand: +
| Region | Start | End |
| gene | 25956 | 31657 |
| mRNA | 25956 | 31657 |
| exon | 25956 | 26952 |
| exon | 27272 | 27349 |
| exon | 28194 | 28289 |
| exon | 28408 | 28464 |
| exon | 28654 | 28806 |
| exon | 28908 | 28992 |
| exon | 29166 | 29256 |
| exon | 29380 | 29544 |
| exon | 29920 | 29997 |
| exon | 30423 | 30520 |
| exon | 30631 | 30706 |
| exon | 30796 | 31027 |
| exon | 31173 | 31657 |
| CDS | 26893 | 26952 |
| CDS | 27272 | 27349 |
| CDS | 28194 | 28289 |
| CDS | 28408 | 28464 |
| CDS | 28654 | 28806 |
| CDS | 28908 | 28992 |
| CDS | 29166 | 29256 |
| CDS | 29380 | 29544 |
| CDS | 29920 | 29997 |
| CDS | 30423 | 30520 |
| CDS | 30631 | 30706 |
| CDS | 30796 | 31027 |
| CDS | 31173 | 31334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 119 | 219 |
| PF06507.12 | Auxin_resp | 245 | 288 |
| PF06507.12 | Auxin_resp | 288 | 321 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.