PH01002852G0090's details annotation
1.Annotation
ICBR annotation: EMB2423, putative
Blast result AT3G48470 : 8.30E-64
Blast annotation: embryo defective 2423
2.Location
Scaffold: PH01002852
Strand: +
| Region | Start | End |
| gene | 76693 | 87641 |
| mRNA | 76693 | 87641 |
| exon | 76693 | 79064 |
| exon | 79167 | 79195 |
| exon | 79780 | 79886 |
| exon | 80630 | 80797 |
| exon | 81729 | 81936 |
| exon | 82182 | 82350 |
| exon | 82917 | 83044 |
| exon | 83339 | 83474 |
| exon | 83562 | 83921 |
| exon | 84156 | 84238 |
| exon | 84349 | 84558 |
| exon | 85017 | 85081 |
| exon | 85172 | 85370 |
| exon | 87199 | 87641 |
| CDS | 78860 | 79064 |
| CDS | 79167 | 79195 |
| CDS | 79780 | 79886 |
| CDS | 80630 | 80797 |
| CDS | 81729 | 81936 |
| CDS | 82182 | 82350 |
| CDS | 82917 | 83044 |
| CDS | 83339 | 83474 |
| CDS | 83562 | 83921 |
| CDS | 84156 | 84238 |
| CDS | 84349 | 84558 |
| CDS | 85017 | 85081 |
| CDS | 85172 | 85370 |
| CDS | 87199 | 87447 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001229 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis |
| coexpression network | CFinderM001408 | outer membrane, peptide-methionine-(S)-S-oxide reductase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10193.8 | Telomere_reg-2 | 531 | 601 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.