Annotation of co-expression genes

PH01002854G0020's details annotation

1.Annotation

ICBR annotation: pectinesterase, putative, expressed

Blast result AT5G53370 : 3.00E-148
Blast annotation: pectin methylesterase PCR fragment F

2.Location

Scaffold: PH01002854
Strand: -

RegionStartEnd
gene1062213263
mRNA1062213263
exon1062211392
exon1149913263
CDS1069211392
CDS1149912633

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Carbohydrate_EsterasesCE8

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04043.14PMEI70237
PF01095.18Pectinesterase297594

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004857enzyme inhibitor activity
GO:0005618cell wall
GO:0030599pectinesterase activity
GO:0042545cell wall modification

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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