PH01002854G0250's details annotation
1.Annotation
ICBR annotation: abscisic acid insensitive 8, putative, expressed
Blast result AT3G08550 : 0.00E+00
Blast annotation: elongation defective 1 protein / ELD1 protein
2.Location
Scaffold: PH01002854
Strand: +
| Region | Start | End |
| gene | 166246 | 172824 |
| mRNA | 166246 | 172824 |
| exon | 166246 | 166793 |
| exon | 168132 | 168281 |
| exon | 168360 | 168412 |
| exon | 168839 | 168947 |
| exon | 169734 | 169868 |
| exon | 169939 | 169983 |
| exon | 170972 | 171159 |
| exon | 171277 | 171418 |
| exon | 171738 | 171784 |
| exon | 171871 | 171958 |
| exon | 172064 | 172824 |
| CDS | 166407 | 166793 |
| CDS | 168132 | 168281 |
| CDS | 168360 | 168412 |
| CDS | 168839 | 168947 |
| CDS | 169734 | 169868 |
| CDS | 169939 | 169983 |
| CDS | 170972 | 171159 |
| CDS | 171277 | 171418 |
| CDS | 171738 | 171784 |
| CDS | 171871 | 171958 |
| CDS | 172064 | 172345 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001372 | Spliceosome GT32 GlycosylTransferases Golgi stack, AGC_NDR (from iTAK) GTnc GlycosylTransferases thiol oxidase activity, nucleotide binding, snRNA_binding |
| coexpression network | CFinderM001373 | GTnc GlycosylTransferases phospholipid transport, cellular metabolic process, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GTnc |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.