PH01002857G0060's details annotation
1.Annotation
ICBR annotation: auxin response factor 7, putative, expressed
Blast result AT1G59750 : 0.00E+00
Blast annotation: auxin response factor 1
2.Location
Scaffold: PH01002857
Strand: -
| Region | Start | End |
| gene | 16076 | 21935 |
| mRNA | 16076 | 21935 |
| exon | 16076 | 16995 |
| exon | 17096 | 17286 |
| exon | 17373 | 17851 |
| exon | 18000 | 18168 |
| exon | 18331 | 18406 |
| exon | 18506 | 18625 |
| exon | 18970 | 19134 |
| exon | 19258 | 19348 |
| exon | 19562 | 19646 |
| exon | 19760 | 19912 |
| exon | 20101 | 20157 |
| exon | 20276 | 20371 |
| exon | 20552 | 20667 |
| exon | 20881 | 21000 |
| exon | 21410 | 21935 |
| CDS | 16818 | 16995 |
| CDS | 17096 | 17286 |
| CDS | 17373 | 17851 |
| CDS | 18000 | 18168 |
| CDS | 18331 | 18406 |
| CDS | 18506 | 18625 |
| CDS | 18970 | 19134 |
| CDS | 19258 | 19348 |
| CDS | 19562 | 19646 |
| CDS | 19760 | 19912 |
| CDS | 20101 | 20157 |
| CDS | 20276 | 20371 |
| CDS | 20552 | 20667 |
| CDS | 20881 | 21000 |
| CDS | 21410 | 21440 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 162 | 262 |
| PF06507.12 | Auxin_resp | 288 | 370 |
| PF02309.15 | AUX_IAA | 566 | 668 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | auxin response factor | ko04075 | K14486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.