PH01002858G0120's details annotation
1.Annotation
ICBR annotation: jmjC domain containing protein, expressed
Blast result AT1G62310 : 1.00E-122
Blast annotation: transcription factor jumonji (jmjC) domain-containing protein
2.Location
Scaffold: PH01002858
Strand: -
| Region | Start | End |
| gene | 78055 | 91212 |
| mRNA | 78055 | 91212 |
| exon | 78055 | 78230 |
| exon | 79451 | 79498 |
| exon | 79730 | 79816 |
| exon | 80277 | 80375 |
| exon | 80458 | 80556 |
| exon | 80639 | 80737 |
| exon | 80820 | 81112 |
| exon | 84332 | 84545 |
| exon | 85366 | 85396 |
| exon | 85787 | 85954 |
| exon | 86061 | 86125 |
| exon | 86224 | 86343 |
| exon | 86453 | 86538 |
| exon | 86638 | 86665 |
| exon | 87906 | 88238 |
| exon | 88786 | 89569 |
| exon | 89653 | 89716 |
| exon | 89793 | 89928 |
| exon | 90053 | 90152 |
| exon | 90717 | 91212 |
| CDS | 78213 | 78230 |
| CDS | 79451 | 79498 |
| CDS | 79730 | 79816 |
| CDS | 80277 | 80375 |
| CDS | 80458 | 80556 |
| CDS | 80639 | 80737 |
| CDS | 80820 | 81112 |
| CDS | 84332 | 84545 |
| CDS | 85366 | 85396 |
| CDS | 85787 | 85954 |
| CDS | 86061 | 86125 |
| CDS | 86224 | 86343 |
| CDS | 86453 | 86538 |
| CDS | 86638 | 86665 |
| CDS | 87906 | 88238 |
| CDS | 88786 | 89569 |
| CDS | 89653 | 89716 |
| CDS | 89793 | 89928 |
| CDS | 90053 | 90152 |
| CDS | 90717 | 90775 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02373.21 | JmjC | 491 | 539 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.