PH01002858G0290's details annotation
1.Annotation
ICBR annotation: proline-rich family protein, putative, expressed
Blast result AT5G67610 : 3.20E-59
Blast annotation: Uncharacterized conserved protein (DUF2215)
2.Location
Scaffold: PH01002858
Strand: -
| Region | Start | End |
| gene | 176365 | 183640 |
| mRNA | 176365 | 183640 |
| exon | 176365 | 177249 |
| exon | 177483 | 177525 |
| exon | 178644 | 178750 |
| exon | 178850 | 179011 |
| exon | 179310 | 179359 |
| exon | 179509 | 179605 |
| exon | 179700 | 179762 |
| exon | 180994 | 181139 |
| exon | 181237 | 181397 |
| exon | 181490 | 181691 |
| exon | 181778 | 183640 |
| CDS | 177028 | 177249 |
| CDS | 177483 | 177525 |
| CDS | 178644 | 178750 |
| CDS | 178850 | 179011 |
| CDS | 179310 | 179359 |
| CDS | 179509 | 179605 |
| CDS | 179700 | 179762 |
| CDS | 180994 | 181139 |
| CDS | 181237 | 181397 |
| CDS | 181490 | 181691 |
| CDS | 181778 | 181871 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, Linoleic_acid_metabolism iron ion binding, metal ion binding, oxidation-reduction process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
| coexpression network | CFinderM000588 | lipid catabolic process, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10225.8 | NEMP | 148 | 349 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.