PH01002867G0210's details annotation
1.Annotation
ICBR annotation: Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed
Blast result AT1G50030 : 1.00E-130
Blast annotation: target of rapamycin
2.Location
Scaffold: PH01002867
Strand: -
| Region | Start | End |
| gene | 117892 | 122103 |
| mRNA | 117892 | 122103 |
| exon | 117892 | 118007 |
| exon | 118118 | 118324 |
| exon | 119156 | 119370 |
| exon | 119448 | 119613 |
| exon | 119721 | 119849 |
| exon | 119987 | 120127 |
| exon | 120212 | 120322 |
| exon | 120399 | 120467 |
| exon | 121392 | 122103 |
| CDS | 117912 | 118007 |
| CDS | 118118 | 118324 |
| CDS | 119156 | 119370 |
| CDS | 119448 | 119613 |
| CDS | 119721 | 119849 |
| CDS | 119987 | 120127 |
| CDS | 120212 | 120322 |
| CDS | 120399 | 120467 |
| CDS | 121392 | 121526 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000860 | protein targeting, drug_binding P-P-bond-hydrolysis-driven protein transmembrane transporter activity, |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
| coexpression network | CFinderM001390 | dTMP biosynthetic process, dihydrofolate reductase activity, thymidylate synthase activity, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02259.22 | FAT | 45 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.