Annotation of co-expression genes

PH01002870G0150's details annotation

1.Annotation

ICBR annotation: pumilio-family RNA binding repeat containing protein, expressed

Blast result AT2G29190 : 3.00E-121
Blast annotation: pumilio 2

2.Location

Scaffold: PH01002870
Strand: -

RegionStartEnd
gene127801137259
mRNA127801137259
exon127801128588
exon128688128862
exon130393130578
exon131291131401
exon131502131714
exon133126133233
exon133311133452
exon133532134622
exon136839137259
CDS128506128588
CDS128688128862
CDS130393130578
CDS131291131401
CDS131502131714
CDS133126133233
CDS133311133452
CDS133532134622
CDS136839136961

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00806.18PUF433465
PF00806.18PUF469492
PF00806.18PUF505533
PF00806.18PUF541568
PF00806.18PUF578611
PF00806.18PUF614644
PF00806.18PUF658686

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.