PH01002871G0080's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT3G57180 : 7.00E-170
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01002871
Strand: +
| Region | Start | End |
| gene | 51861 | 56228 |
| mRNA | 51861 | 56228 |
| exon | 51861 | 53937 |
| exon | 54557 | 54724 |
| exon | 55157 | 56228 |
| CDS | 52441 | 53937 |
| CDS | 54557 | 54724 |
| CDS | 55157 | 55507 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000121 | proton-transporting ATP synthase complex, catalytic core F(1), ATP synthesis coupled proton transport, Terpenoid_backbone_biosynthesis hydrogen ion transporting ATP synthase activity, rotational mechanism, transferase activity, transferring alkyl or aryl (other than methyl) groups, proton-transporting ATPase activity, rotational mechanism, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01926.22 | MMR_HSR1 | 408 | 483 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.