Annotation of co-expression genes

PH01002871G0120's details annotation

1.Annotation

ICBR annotation: oxidoreductase/ transition metal ion binding protein, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01002871
Strand: +

RegionStartEnd
gene7508477909
mRNA7508477909
exon7508475325
exon7542975521
exon7611576380
exon7654877909
CDS7511875325
CDS7542975521
CDS7611576380
CDS7654876565

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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