PH01002872G0090's details annotation
1.Annotation
ICBR annotation: OsFBT9 - F-box and tubby domain containing protein, expressed
Blast result AT1G53320 : 1.00E-119
Blast annotation: tubby like protein 7
2.Location
Scaffold: PH01002872
Strand: -
| Region | Start | End |
| gene | 53171 | 59324 |
| mRNA | 53171 | 59324 |
| exon | 53171 | 54777 |
| exon | 55160 | 55285 |
| exon | 56903 | 57032 |
| exon | 57782 | 57869 |
| exon | 58705 | 59324 |
| CDS | 54219 | 54777 |
| CDS | 55160 | 55285 |
| CDS | 56903 | 57032 |
| CDS | 57782 | 57869 |
| CDS | 58705 | 59052 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 53 | 97 |
| PF01167.17 | Tub | 116 | 190 |
| PF01167.17 | Tub | 231 | 411 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.