PH01002880G0230's details annotation
1.Annotation
ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed
Blast result AT3G26430 : 1.00E-114
Blast annotation: GDSL-like Lipase/Acylhydrolase superfamily protein
2.Location
Scaffold: PH01002880
Strand: -
| Region | Start | End |
| gene | 168925 | 170711 |
| mRNA | 168925 | 170711 |
| exon | 168925 | 169323 |
| exon | 169426 | 169696 |
| exon | 169728 | 169799 |
| exon | 169841 | 170010 |
| exon | 170205 | 170291 |
| exon | 170420 | 170711 |
| CDS | 169049 | 169323 |
| CDS | 169426 | 169696 |
| CDS | 169728 | 169799 |
| CDS | 169841 | 170010 |
| CDS | 170205 | 170291 |
| CDS | 170420 | 170681 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GHnc |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00657.21 | Lipase_GDSL | 41 | 367 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0016787 | hydrolase activity |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.